SNP Profiles of ICS 6 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	AC	TT	TT	AT	CC	CT	AG	TT	GG	TT	AA
1._RUQ_721	_	_	_	_	_	_	_	CC	_	_	_	GG	_	_
2._RUQ_721	_	_	_	_	_	_	_	CC	_	_	_	GG	_	_
3._ICS_6	_	_	_	_	_	_	_	CC	_	_	_	GG	_	_
4._ICS_6	_	_	_	_	_	_	_	AC	_	_	_	_	_	_
5._ICS_6	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
6._ICS_6	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
7._ICS_6	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
8._ICS_6	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
9._ICS_6	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
10._ICS_6	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
11._ICS_6	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
12._GC-08-049-1-60	_	_	_	_	_	_	_	AC	_	_	_	_	_	_
13._GC-08-049-1-60	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
14._GC-08-049-1-60	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
15._GC-08-049-1-60	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
16._GC-08-049-1-60	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
17._GC-08-049-1-60	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
18._GC-08-049-1-60	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
19._GC-08-049-1-60	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
20._RUQ_721	_	_	_	_	_	_	_	CC	_	_	_	GG	_	_
21._GC-08-49-1-60	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AC	CT	CC	CT	CC	AG	CC	AT	AC	CC	TT	AA	CG
1._RUQ_721	GG	_	_	_	_	CC	_	CC	_	AA	CC	_	_	_
2._RUQ_721	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
3._ICS_6	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
4._ICS_6	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
5._ICS_6	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
6._ICS_6	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
7._ICS_6	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
8._ICS_6	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
9._ICS_6	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
10._ICS_6	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
11._ICS_6	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
12._GC-08-049-1-60	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
13._GC-08-049-1-60	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
14._GC-08-049-1-60	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
15._GC-08-049-1-60	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
16._GC-08-049-1-60	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
17._GC-08-049-1-60	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
18._GC-08-049-1-60	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
19._GC-08-049-1-60	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
20._RUQ_721	GG	_	_	_	_	CC	_	CC	_	AC	GG	_	_	_
21._GC-08-49-1-60	AG	_	_	_	_	CC	_	CC	_	AC	GG	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	CG	TT	GG	GG	CT	TT	CC	AA	TT	CC	AG	CG	AA
1._RUQ_721	_	_	TT	GG	GG	_	_	CC	_	_	CC	-	_	AA
2._RUQ_721	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
3._ICS_6	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
4._ICS_6	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
5._ICS_6	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
6._ICS_6	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
7._ICS_6	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
8._ICS_6	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
9._ICS_6	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
10._ICS_6	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
11._ICS_6	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
12._GC-08-049-1-60	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
13._GC-08-049-1-60	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
14._GC-08-049-1-60	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
15._GC-08-049-1-60	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
16._GC-08-049-1-60	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
17._GC-08-049-1-60	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
18._GC-08-049-1-60	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
19._GC-08-049-1-60	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
20._RUQ_721	_	_	_	CC	GG	_	_	CC	_	CC	GG	AG	_	AA
21._GC-08-49-1-60	_	_	_	AC	AG	_	_	CC	_	CC	CG	GG	_	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CT	CT	AT	CT	AA	TT	TT	GT	AA	TT	TT	TT	GG	GG
1._RUQ_721	-	_	_	_	_	_	_	_	_	TT	_	_	_	_
2._RUQ_721	_	_	_	_	AA	_	CT	_	_	TT	_	_	_	_
3._ICS_6	_	_	_	_	AA	_	_	_	_	TT	_	_	_	_
4._ICS_6	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
5._ICS_6	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
6._ICS_6	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
7._ICS_6	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
8._ICS_6	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
9._ICS_6	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
10._ICS_6	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
11._ICS_6	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
12._GC-08-049-1-60	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
13._GC-08-049-1-60	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
14._GC-08-049-1-60	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
15._GC-08-049-1-60	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
16._GC-08-049-1-60	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
17._GC-08-049-1-60	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
18._GC-08-049-1-60	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
19._GC-08-049-1-60	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
20._RUQ_721	_	_	_	_	AA	_	_	_	_	AA	_	_	_	_
21._GC-08-49-1-60	_	_	_	_	AA	_	_	_	_	AA	_	_	_	_

	57	58	59
_Input profile	CG	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_721	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_721	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._ICS_6	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._ICS_6	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._ICS_6	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._ICS_6	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._ICS_6	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._ICS_6	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._ICS_6	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._ICS_6	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._ICS_6	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-08-049-1-60	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-08-049-1-60	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-08-049-1-60	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-08-049-1-60	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-08-049-1-60	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-08-049-1-60	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-08-049-1-60	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-08-049-1-60	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._RUQ_721	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._GC-08-49-1-60	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: ICS_6 RUQ_721

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._ICS_6 RUQ_721

96.7 %
15 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._ICS_6 RUQ_721

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._ICS_6

95.8 %
12 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E281 T2

Dapeng Zhang, 2016

4._ICS_6

75 %
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 6

Dapeng Zhang, 2016

5._ICS_6

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._ICS_6

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 4

Dapeng Zhang, 2016

7._ICS_6

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 5

Dapeng Zhang, 2016

8._ICS_6

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 8

Dapeng Zhang, 2016

9._ICS_6

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 9

Dapeng Zhang, 2016

10._ICS_6

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 11

Dapeng Zhang, 2016

11._ICS_6

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 2 > FP

Dapeng Zhang, 2016

12._ICS_6 GC-08-049-1-60

70 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

13._ICS_6 GC-08-049-1-60

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

14._ICS_6 GC-08-049-1-60

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

15._ICS_6 GC-08-049-1-60

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

16._ICS_6 GC-08-049-1-60

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

17._ICS_6 GC-08-049-1-60

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

18._ICS_6 GC-08-049-1-60

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

19._ICS_6 GC-08-049-1-60

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

20._ICS_6 RUQ_721

67.6 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

21._ICS_6 GC-08-49-1-60

55.9 %
17 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 60, Tree: 2 > FP2

Notes: Brazil_Selections_Poss_grandparent

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1253	53	TcSNP1275	54	TcSNP1293	55	TcSNP1401
56	TcSNP1404	57	TcSNP1458	58	TcSNP1524	59	TcSNP1527